Those files are in my header in VSD (I copied those from MB).
Also I check my server & the files are there too.
The menu is not displaying because you forgot to upload the menu files. All of these are missing:
<link rel='stylesheet' type='text/css' href ='new_menu/stylesheets/menu_builder.css'/>
<link rel='stylesheet' type='text/css' href ='new_menu/stylesheets/style.css'/>
<script type="text/javascript" src="new_menu/js/jquery-1.8.2.min.js"></script>
<script type="text/javascript" src="new_menu/js/modernizr-2.6.2-respond-1.1.0.min.js"></script>
<script type="text/javascript" src="new_menu/js/tinynav.js"></script>
<script type="text/javascript" src="new_menu/js/mb.js"></script>