You have to have SD open so that you see the right-most tool pane, which has the element tree at the top.
Click on the red button where it says Collapse all nodes.
Make sure you select the body, so that you don't end up inside some now buried container.
Then go to the left-most tool pane and add a container div. Most likely it will end up below all the others.
We have different preferences about how to proceed from there. My way is like this:
Back on the right-most one:
You may possibly collapse all nodes again. Then you see what you have to move, it should hopefully not be too much if they are all collapsed.
Make sure the new container is open (wee arrow pointing down)
Grab the last one of those that are to go into the new container, and drag it down until it is aligned with the text of the new container, then let go of it. Now it should be inside.
Take the next container and do the same. Then it should land above the first one you moved.
Continue like that until you've got them all inside.
It takes longer to explain than actually to do.