Why not try this on just 1 website
Do a save as of your website rename it mytestsite and upload it to a subdomain.
Set up a subdomain testsite1.yourdoamain.com, ALLOW TIME FOR SUBDOMAIN TO PROPOGATE, and new set of ftp settings :: public_html/testsite1/ and use the inbuilt FTP within VSD to upload and see if it gets it all OK, if not remove the public_html/ and try again
It will be easy to remove it later with direct or free ftp as you know its in a completely new folder.
I just have a suspicion this is all due to using an outside ftp program and then your viewing it with some sort of cash issue displaying as its always uploading to the same place.
And obviously if this works delete the genuine one completely do a save as and re name, and then upload with the inbuilt ftp to public_html OR NOT as test proves works for you.
Started using CC VSD in January 2009, I don't do HTML code, Sales from CC site exceeding expectations taken me out of semi-retirement
Hosted FREE on CC S DRIVE www.chauffeurdrivenluxurycars.co.uk
My new VSD & SCCP site Oct 2011 www.deloreanjewellery.co.uk
My friendly window cleaner www.mwcwindowcleaner.co.uk
Hosted FREE on CC S DRIVE www.chauffeurdrivenluxurycars.co.uk
My new VSD & SCCP site Oct 2011 www.deloreanjewellery.co.uk
My friendly window cleaner www.mwcwindowcleaner.co.uk