Scott,
I also have issues with object rotation, object layers and final page creation.
My issue is I have a couple of pictures that I rotated @ 15deg and they are stacked or layered to look a specific way. It shows it correctly on the screen, but when the page is built the background is in the wrong layer.
Here is what happens when the page is built under VSD 6.0.1 (I will try 6.0.2) -
http://www.testprod.com/debug/index.com
Here is the same page built with VSD 5.9 - http://www.autolinkeadvisor.com/
Thanks,
Larry
Please open a support ticket for this and send us the vnu and all source files. We can then take a closer look into this issue.