I started messing around with a template tonight in CCHE just to see how it all was put together and trying a php include setup that I found today to see how that all worked etc. Anyways, when I went to upload the original site setup (before i changed any of the php stuff) I got an error on upload that said it was missing a .js file. Here's the script from the beginning area of the index.html file that shows it is referencing these 2 .js files, and neither of them are there:
<link rel="stylesheet" type="text/css" media="screen" href="css/thickbox.css" />
<script type="text/javascript" src="js/jquery.js"></script>
<script type="text/javascript" src="js/thickbox.js"></script>
</head>
This is for the Electric Shock theme that comes with the CCHE. I went to the directory that CCHE is installed in to check the theme in there just to make sure it was just not a bad install in the editor, but the files aren't in there either.